Emergent patterns in nature and society


Open learning

This was the blog I maintained during my PhD. It has been 6 years since I graduated and the journey have brought me on research adventures to Princeton, MIT, and back to Sweden. Now as a “grown up” researcher I’m still learning, everyday. And one of the joyful challenges of my career is learning how to become a good teacher.

Motivated by the covid-19 pandemic, the working from home situation, and the all-zoom-teaching that we have to endure either as teachers or students, I’ve recently enrolled on a course about open networked learning. It is highly recommended, all materials are online and you can study at your own pace. Or take the course for credits through one of the offering institutions (Stockholm University in my case), which gives you additional access to mentors and a network of students/teachers facing the same challenges as you. I’ll be blogging a bit some reflections triggered by the course.

The first part of the course catered around digital literacy. Technology has changed the way we communicate and connect to each other. Only in the last few decades, there has been an overwhelming boom of different ways to socially engage: e-mail, facebook, twitter, instagram, tik tok; you name it. It is changing the way people relate to each other, how information is consumed and produced, and even influenced political debates, health, and businesses. An excellent documentary about its impact is The Social Dilemma (Netflix).

But it also change the way we do education, the way we teach, learn. The meaning of the word classroom. It presents us with challenges and opportunities, and they are shaped by digital literacy. This is, how a person engage with digital tools, platforms, and how she interacts online. It defines the learning style of students, and challenge the teaching style of physical class room teachers. Learning occurs on the embedded networks of social interactions. In the classroom, it takes place in between conversations between teachers and students, but most importantly: in between students. Such conversations point out different understandings, rise questions, and offer opportunities to get our head around new problems, new concepts or re-evaluate old knowledge.

Online the same magic can happen but the networks of social interactions can take different forms. Working on an shared online document in google could become the place of asynchronic discussions. Questions can rise on twitter, longer discussions on slack, while teaching material can be delivered through different media such as video, or interactive exercises. Are we taking advantage of this new horizon of possibilities? Are we testing what works best or not for teaching? Are we helping students to feel comfortable within their digital literacy? And as teachers, are we using a set of digital tools that facilitates learning and perhaps provides a diversity of tools that satisfy the different learning styles?

The pandemic has force us to move the classrooms online. We all have suffered from zoom fatigue, and I can only wonder how tired students are from a lecture after another a year in a row. Research shows the rate of learning has decreased when learning from home. But it is also an opportunity to experiment, try out things and learn how to be a better teacher; how to help our students to have a joyful learning journey.


Inequality and the biosphere

Soon I will be coming back to Stockholm to think about inequality and the biosphere with a group of young scholars. Here are some random notes that I want to keep in mind for the meeting. Abigail Sewell reviews the book The Dead Gap by David Ansell and writes in Nature today:

“There is a 35-year difference in life expectancy between the richest US neighbourhoods and the most deprived.”

There are links between inequality and health, education, and in general life satisfaction. If you are more likely to die because of inequality, why would you care for the biosphere if society don’t care about yourself?

The Death Gap presents a Marxian view of inequality as a societal disease that in turn produces biological disease, dispersed differentially across the sociopolitical hierarchy. Although he is a physician, Ansell uses metaphorical language that may stump readers in biomedical fields. Moving beyond epidemiological frameworks that model what would happen to an individual exposed to a single causal factor, Ansell weaves a much more complicated story, in which structures of disadvantage affect every step of the process of survival. The Death Gap provides an overarching framework for understanding the root cause of ethno-racial and economic disparities in illness that seamlessly weaves together the very best research in epidemiology, public health, medical sociology, health policy and psychology.



“One doesn’t get credit for the projects that get started but for the ones that get finished”

– César Hidalgo

Mapping regime shifts

The regime shifts database (RSDB) is to my knowledge the largest repository of information about regime shifts in the world. It synthesises scientific literature about known social-ecological regime shifts that can have impacts on ecosystem services. I always think of it as a Wikipedia of regime shifts: a public online repository where people can go and learn what are they about, but also contribute content and cases.

Lead by Oonsie Biggs and Garry Peterson at the Stockholm Resilience Centre, the database started as an internship I did as master student in 2009. Later it became my master thesis and soon after the core of my doctoral studies. Several master thesis have been published using the database and it has also been useful for international assessments of regime shifts. It contributed to Global Biodiversity Outlook 3 (2010), the Arctic Resilience Assessment (2016), and more recently I was asked to contribute a short synthesis for IPBES – the International Panel for Biodiversity and Ecosystem Services.

Despite its importance, at least on my eyes, the regime shift database is largely unknown to the scientific community. There is no published peer reviewed paper describing how it was done and how can it be used. As a result, few groups have been publishing work suggesting that a framework for comparing regime shifts is needed, in other words: reinventing the wheel. The first public available draft of that paper is included on my Licenciate thesis (2013), and a later edited pre-print was posted on bioRxive (2015) that was included on my PhD thesis. I needed to graduate. Unfortunately, it has never been submitted for peer-review and people keep using the database without knowing how to give proper recognition to our work. The draft has been sitting on Oonsie’s desk for literally years waiting for the submit button to be pressed.

To date the database describes 30 generic types of regime shifts and 324 case studies, plus a few experimental cases that if included add up to 35 regime shift types. A generic type is for example the coral reefs transitions from coral dominated reefs to macro-algae or other alternative stable states; while a case study would be the coral transitions in Jamaica. A generic type is a collection of all drivers and mechanisms that can produce a particular regime shift, while a case is an instance of its occurrence. An analogy that often helps me distinguish them is the one of a disease (generic type) and the patient (case). Such was my enthusiasm with this project that out of the 30 regime shifts currently available, 16 were contributed by me during the first year of my PhD. Most case studies were contributed by my friend and colleague Johanna Yletyinen (@jo_yletyinen) who spent a lot of time digitalising the Hypoxia database made available by the study of Diaz and Rosenberg in Science (2008). The rest of the contributions have been developed in the class room with master students or researchers who have been generous to share their work with us by filling up a data template. Roughly 1000 scientific publications have been reviewed to build the database.

Last week writing the synthesis for IPBES made me think that we need better visualisations of the RSDB. I created a map where large dots represent generic types or regime shifts. The are located on the kind of ecosystem where they would be expected to occur. So for example, fisheries collapse is located on the southern ocean close to Antarctica (a place where many fish stocks have been reported on be in decline), but a case study about salmon appears on the other side of the planet in Alaska. Case studies are the small dots on the same colour as their generic types. You can see all the hypoxia cases that Johanna coded especially on the coasts of Europe, North America and Japan. Creating the map brought memories of my days writing regime shifts reviews for the database. It also made me realise that it has been few years I have not contributed besides my teaching duty. Disappointed by the lack of commitment with the paper, my PhD student enthusiasm almost disappeared. The last draft I worked on was on desertification (2014?), it was never reviewed nor published online. Each contribution to the RSDB has been peer reviewed by an expert on the topic to make sure we do a fair assessment of the literature.  Here is the map:RSDB_map.png

Currently I live in the United States, Princeton to be precise. It’s not a secret for anyone who follow the news -or try to avoid them like me- that the political situation here is concerning, to say the least. The kind of situation when you ask yourself what can I do? How do I contribute to make this a better place. Scientist being censored, immigration policies that not only contradict the USadian heritage of immigrants but also remind us of a one of the darkest moments of human history. Whatever I could think of seems insignificant.

Then I looked the map again and tried to remember what was my driver when contributing to RSDB. It was making knowledge free for others to be used, the kind of thing that doesn’t contribute to your career but hopefully is doing some good somewhere. If you come from a place such as the one I come from, you know that scientific knowledge is locked behind paywalls and most of people do not have access to scientific literature. Documenting change in ecosystems and making available to a broader public was important to me. It was like sending wealth to someone else, no on the form of money but knowledge, making sure it’s available when is needed, for free. A lot of people is marching for life and standing up for science. My way of contributing will be by putting dots on the map, making scientific facts count and visible when needed. From now on every week I will contribute a case to RSDB. Let’s make science count. If you want to contribute just drop me a line.




Book review: Alguien tiene que llevar la contraria

alguien-tiene-que-llevar-la-contraria-500x500Mis vacaciones este año en Colombia fueron cortas y por tanto elegí un libro que se veía corto pero sustancioso. “Alguien tiene que llevar la contraria” es una colección de 12 ensayos escritos por Alejandro Gaviria, el actual ministro de salud de Colombia. El título me viene como anillo al dedo, pero en verdad lo que me cautivo fue el autor. Yo conocí a Alejando en 2008 cuando el era decano de Economía en la Universidad de los Andes y yo comenzaba a trabajar como asistente de investigación en el grupo del economista ambiental Jorge Maldonado. Alejandro Gaviria, como varios de mis profesores modelo (e.g. Garry Peterson, Juan Camilo Cárdenas) comenzó su carrera como Ingeniero. Luego hizo su doctorado en Economía en la Universidad de California, y aunque escribe y piensa como economista, también ha hecho carrera como columnista en periódicos nacionales,  ha escrito varios libros, mantiene un blog, y ha recibido premios por su labor como investigador, docente, y periodista. En resumen, es una persona que no solamente es un buen académico, también es un buen comunicador y ha tenido el coraje de pocos de hacer la transición de escribir artículos científicos a políticas publicas. El libro, ya en su cuarta edición tan solo tres meses después de la primera, está catalogado por la editorial como ‘sociología’. Ahi fue cuando me pregunte: cómo lo hace?

El libro se divide en tres secciones. La primera titulada ‘Liberalismo y cambio social’ tiene un matiz mucho mas filosófico y literario. Son un conjunto de reflexiones valiosas sobre que es la democracia, sus limitantes, el conflicto y su valor como motor de cambio social, al igual que la importancia del escepticismo. Esta primera parte muestra el aprecio que Gaviria tiene por la literatura y como el contar historias nos ayudan a imaginar futuros y criticar presentes. Me gusto mucho como resalta el valor del conflicto en la sociedad, respetuoso y necesario, al igual que el valor del escepticismo, una practica imprescindible en el quehacer científico.

La segunda parte es sobre hechos y palabras. Tiene un matiz mucho mas histórico y es muy rico en detalles del contexto colombiano. Comienza evaluando la evolución de la desigualdad en Colombia y el apogeo de las ideologías Marxistas en los países latinoamericanos. Continua con una breve reseña del Darwinismo en Colombia, de como las ideas evolutivas fueron en un principio rechazadas y finalmente aceptadas en nuestro país.  Introduce también la historia de la ‘meritocracia’, un termino acuñado por Michael Young en 1958 cuyo significado se ha transformado en algo menos negativo de lo propuesto por el autor de El ascenso de la meritocracia. Gaviria retoma su significado original y advierte de sus consecuencias negativas en la division de clases sociales y en ultimas el aumento de la desigualdad. Por ultimo, el autor revista la historia de la guerra contra las drogas en Colombia con una colección buenísimas de referencias para el lector interesado.

La tercera parte fue mi favorita. Gaviria cierra el libro con ensayos mas académicos basados en hechos y estadísticas del progreso social en Colombia y otros países latinoamericanos. Entre otros temas, trata la disminución de la pobreza, un análisis de movilidad social y por ultimo una critica a la ‘crisis’ de salud publica. Gaviria es cauto al advertir que es largo el camino por recorrer, pero a la vez sincero en dejar claro que progreso si ha habido, mas social que económico, pero definitivamente no es negligible. Lo que me gustó fue el aire de realismo optimista que se respira entre sus lineas. Llama al colombiano a criticar la realidad desde los hechos, a no darnos palo tan duro y de gratis, y darnos cuenta que si se puede. Gaviria deja ver aqui y allá su pasión por la literatura, sus gustos y disgustos ideológicos y politicos, así como los dilemas éticos que enfrenta como funcionario público. Al final de cuentas es un ser humano como cualquier otro que a travez de su escritura invita a repensar el país y la época que nos toco vivir de una manera diferente, al menos constructiva.